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@crashnburn: before deleting a book from your library, locate it in the library, swipe it to the left and tap share. From the menu, choose "export annotations". This will let you email an .mrv file to yourself that contains all the highlights, notes, bookmarks and vocabulary for the book. When you delete the book and install the fresh copy, you can email the mrv file back to yourself and open it in Marvin to import the bookmarks for that book.
As you say, the book changed so the only way that Marvin can correctly guess that the mrv file belongs to the new copy of the book is by doing a Title+Author match (technically, Marvin uses some other criteria but unless you substantially changed the structure of the book it won't make a difference). If you also changed the Title+Author in the new copy of the book, Marvin cannot determine that the mrv file belongs to that book and will not import the mrv file.
@fireland: Many thanks!
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