@kevenv: Glad to see you have a solution, even if it is direct editing like that. Could I have a look at the database backup? The initial symptoms sound like an issue on the Kobo server that I thought had been fixed months ago. But, the duplicates turning up again after the factory reset and the sync with calibre is a bit different. I'd like to check the database to see if I can workout were they came from.
Could you send me a copy of the database backup? Either put it somewhere that I can download it and send me a PM with the link, or send me a PM for an email address to send it to. Looking at it will help me work out if there is something in the driver that needs to be fixed.
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