Thanks for the swift and helpful reply.
I am attaching two small and simple epub files which demonstrate the behaviour.
The first has only been converted from HTML to ePub. Nothing else has been done.
The second has been converted from the same HTML file, but has also had the TOC editor opened and closed (no editing was done).
The first works as expected in FBReader, the second doesn't. If you want to see for yourself, simply open the TOC reader and close it again on the first ePub file. You don't even need to edit anything, it seems to rewrite the TOC anyway.
Once again, thank you very much for your help.
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