First of all, it's not "most" books, but rather books where there's no proper chapter division or page break. For an authors like Proust, it's probably all of his books but overall it represent only a small % of books.
I could probably detect those books and flag them, but honestly, I really hate the fact that the only way to get rid of this problem is not to "fix" the files but rather to "modify" the presentation of the books by adding page breaks where there should be none.
The gap between IDPF-compliant ePub and DE-compatible ePub is annoying, and that's an issue that should be clearly discussed within IDPF.
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