I tried Calibre Companion, and after fighting a couple of days with it finally got it to connect to Calibre. Then found the Companion program didn't do what I wanted it to do.
Now I just plug the Nexus into USB, and Calibre recognises it. I transfer my epubs over in to a folder. While in the Nexus I use the file managers to find the folder, find the book and tap on it. Then the Nexus asks me which eReader app I want to open the ePub in. Depends on what programs I've downloaded for epubs at the moment. Chose the App I want and it loads the book into that App and opens it.
Works very well for me.
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