You mean exporting the manual overrides aswell? Usually I export the ePub WITHOUT the manual overrides to get a cleaner ePub, that's why I try to remove all the overrides first. I check them one by one, because sometimes the guy who makes the print version did manual italic formatting, or superscript or things like this and only way I can spot them is Preflight.
I could try to export it with the overrides and see what it looks like.
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