@Dr@ven-
You can just do a mobi to mobi conversion. Then...
After deleting all of the books off of your PW, add one you're certain is not corrupted to make sure everything works. Then start adding them back in small increments (depending on your total...5-10 books at a time perhaps) until it fails...at which point you will have an easier time nailing down the culprit. Tedious, yes. Effective, usually. If anyone has a better way to identify a corrupted file that is not being fixed by a mobi to mobi conversion please chime in.
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