EDIT: Scratch my previous reply, it was factually wrong.
@NullNix: The files on /mnt/us/opt/jbpatch/ always take precedence over the ones in /var/local/jbpatch. So because you performed a manual sync, you're now essentially stuck with the version that's on /mnt/us. Currently working on a fix which actually considers filetimes correctly.
Last edited by ixtab; 02-02-2013 at 10:00 PM.