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Dear Jack; this is EXACTLY the BS I was warning the original poster about. Please re-ignore me.
Calibre does EXACTLY the same as Kobo Desktop, Windows Explorer, xcopy, linux cp, and any other program. It calls an O/S API on the host to create a file on a storage device.
The storage device is the same in all cases; the file system exported via USB by the Kobo to the host O/S.
There is NO magic that one means of moving data to it gets that another does not.
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