WhileMOBI and PDF will work for images, it is not ideal as they will not display in the Kindle's Picture Viewer (which allows viewing at full resolution of 1200x824). For MOBI format the maximum resolution displayed will be 1022x744 due to the toolbar.
I believe Calibre should rename the files in a different manner, as with the current method the Kindle will always display the pictures out of order due to it always sorting by the first digit.
I have no solution as of right now other than to use Mangle instead which seems to handle renaming much better (in series of 5-digits, ie 00001, 00002, etc). Unfortunately Mangle does not crop the borders of the comic.
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