As far as I know the simple answer is no any highlighting is saved as a separate file and is not integrated into the e-pub so you will finish up with two files that have to be used with the same app on the same device at the same zoom for it to have any meaning.
The only way you are going to achieve what you want is to edit the e-pub directly using some program like Sigil and then saving the resulting e-pub.
Doing it that way will get round the problems of different devices using different readers with different zoom levels.
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