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Sorry. Should have realized that others are likely having similar issues. Just as I posted the thread, at the end was a list of similar issues. One of them included a link to an article posted on the list about issues with pdf conversions. Unfortunately, I can't find the link. One item it in referred to the fact that pdf somehow sees each sentence as a paragraph and as a result some pdf conversion algorithms have trouble knowing when to insert a real paragraph and do it at the wrong time. Instead of trying to figure all of this out, I was able to use ebook as and intermediary and when I translated from ebook into mobi everything went fine.
Hope this helps. If I find the link I'll post it.
--Kenoli
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