Ok a little bit more. Roboform tries to attach itself to windows programs when they open. This seems to be the problem causing Calibre to shut down. Inside options in Roboform there is a section called Application Integration. Inside this section you can have Roboform automatically attach to Windows Applications. Also you can set up a black list of programs you don't want to automatically attach to Roboform. I put Calibre in the black list section so Roboform wouldn't try and attach to it. It seems to have fixed my shut down problems when converting with Calibre. Again I have done reboots to make sure the problem is repeteable and fixable with what I've done.
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