@franklekens: You're confusing the HTML (inline) TOC and the logical NCX TOC.
The HTML TOC is just that, a bunch of html links on a page, which is what you're referring to.
The NCX TOC, on the other hand, is what's responsible for the chapter 'notches' in the progress bar on the K3 (and the next/prev chapter skipping), and the detailed Go To > Table Of Contents popup listing on the Touch.
TL;DR: Your book is missing a proper NCX TOC.
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