Thanks again for your input. The endnotes have to be a numbered list within Indesign but if I export the file to an ePUB first (rather than using the Kindle plug-in to go straight to mobi) I can tell ID not to export the list using <li> tags. We can perhaps programmatically tweak the html in the ePUB to be a better input for Kindlegen.
I'm not at work now so I can't play with it but I now have an avenue of enquiry! Thanks.
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