Periodicals is not supposed to be visible in Recently read or in auto-collections. It is not a bug - it is a feature. It is done on purpose, since there is a separate collection for periodicals.
I will take a look and try to reproduce what you are describing with regular books when I have a chance. Would not be able to do it with periodicals - since I do not have or use them at all. I did not touched code to handle them - so I think you would run into the same issues with original Sony software, but I am not sure...
And finally - I've seen some strange behavior from Content Manager scan when some of the books were corrupted. I already attempted to improve this a bit, but quite possibly not enough.
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