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I found the font, opened the container.xml file in the META-INF folder and the xml file looks like this
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That's not the contents of the "container.xml" file. That's the "encryption.xml" file... used with fonts that are obfuscated using Adobe's font-mangling scheme. It tells reading systems how to un-obfuscate the fonts.
If the font displays properly in ADE but not in iBooks (at least I assume you mean iBooks since iPad is not an ebook reader), then it must be a quirk of the iBooks reader. There are many.
Was there a "com.apple.ibooks.display-options.xml" in the META-INF folder along with the container.xml and encryption.xml files? It needs to be there for embedded fonts to work properly in iBooks.