Not exactly what you are asking, but I have a custom column where I rate each book on quality and or problems to clean up later when time permits.
Many pdf`s as you have noted do not convert well on the first effort. Some never do.
Mostly I delete .lit .lrf etc. when the epub looks good. But I am not fanatical about it. Duplicate titles and extra tags annoy me more than extra formats.
Helen
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