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For html edits, I only use notepad++.
Their search and replace functions are far superior to anything out there, equal if not better to MS Office; definitely faster than MS Office (though I find MS Office a lot easier to use).
As far as linking back to the previous link, normally most readers have a back button.
But if not, it's going to be quite some work! It might be easier linking those footnotes back to a chapter or something.
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