I am sort of a nutbar about backing things up, I have way to many backups
I usually copy my calibre library using Windows 7 copy and I have lost books/formats every time. Same with the calbre move to/copy. And I get no error messages during/after copy. When I copy to a USB drive to transfer library to another computer same problem.
I don't think it is a calibre programming problem using the calibre copy to library function. I suspect it uses OS copy functions.
What has so far worked flawlessly for me is using winrar to archive the library and unarchive it in new location.
I get winrar error messages on occasion saying path name is too long and coincidentally these are usually the missing books.
At least it tells me and I can fix the problem immediately.
Helen