Missing chapters when converting Kobo epub
I bought a Jack Vance mystery this morning from Kobo and downloaded the DRM free epub to my Mac. Then I added it to calibre (version 0.8.41) and converted to mobi. Somehow it removed the first two chapters (and all the gobbledygook before that) during the conversion, it even removes the chapters from the Table of Contents. I've tried converting epub to epub, same result, the first two chapters are missing due to the conversion. There really are Chapters I and II, they show up fine in the calibre reader and ADE when I open the original downloaded epub.
Is there some setting or tweak I need to change to convert Kobo epubs with calibre?
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