Toxarix, with CS 5.5 it's actually pretty good, though not perfect. The html code is clean. I use export tagging and my own CSS style sheet so I have more control over the style naming. I need to put the guide section into the opf file and I use my own cover and title html pages that I create by hand so I pop those in. I tried Sigil but I didn't like it. It made unnecessary changes just opening and closing the epub. I have more control tweaking the files in a text editor or Dreamweaver.
But what I don't understand is how you would use Calibre in conjunction with InDesign. As far as I know, you can't tweak the epub in Calibre.
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