The problem is that PDF can sometimes give you one hell of a poor conversion when trying to convert to something else. It's just nasty at times. So the onyl way to sort it out is to convert the PDF and then sit there and compare the conversion with the original PDF and fix anything you find wrong. You are best off to convert the PDF to HTML. Then compare that and fix any errors. Next once that is done, fix up the HTML so you can convert that to Mobi with Mobipocket Creator.
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