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Yes, that is great news Ebenist. And I didn't realize that Calibre has its own pdf reader, I must be out of the loop. I would imagine that Acrobat preserves the bookmarks if you really need them, though (Acrobat does recognize the bookmarks I make in PDF Annotator, at any rate).
If I ever make the switch to an iPad, I'll have to look into Goodreader.
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