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I think too, that it would be great to have the pluggin able tu merge by its own way.
I have thousands of books. And some of them duplicated.
It would take a lot of time to fix it manually.
I would prefer to have some errors by the plugin, than to have so many duplicates now.
What it should do is Merge the metadata and the ebooks.
When a conflict, perhaps use the first one, and in with the books the larger one... or something like this.
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