#1 sounds like what happens if it somehow loses the current date (which I've had happen when #2 happens)... try synchronizing via wifi or 3g so that it'll reset the date. Then books will start showing up in the right order. Unfortunately any that are messed up stay messed up until you open them again. You may have to set the time again manually (in the settings -- there's no place to set the date though, and time is just stored as an offset from the internal clock -- if your time is wrong and you haven't fixed it yet this indicates that my guess is correct)
I've had #2 happen maybe 6 or 7 times over the last few years -- not enough to care much. How often does it happen to you?
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