Thank you, Katsunami. We can finally agree on something.
Buy your book, strip DRM, convert book into flat text file (html) remove all unnecessary garbage and keep safe. Now that I think about it, you should convert the html to LaTeXe as that is easier to read in a plain texteditor. You got your \chapter marks and all that. Heck. even footnotes are perfect as they are right in the spot they should be in - no scrolling or clicking to get to them.
Now all we need is a LaTeX to epub compiler - one that outputs a epub file that is compatible for conversion to mobi later on. Agreeing on the few things mobi wants should not be too hard should it?
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