As long as you are connecting it to your computer via USB, just download the file to your desktop then drag and drop the e-pub file onto the Kobo. In theory you should be able to use "Save As" onto the wifi since it would be mounted as a drive, but I can't say I've tried that. You can't directly download onto the Kobo Wifi through the wifi (may be possible with Calibre, but the easiest is drag and drop).
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