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You need to provide an actual error message that occurs when you try to open the database. The one you provided is meaningless as it is caused by trying to use functions that are not available.
If you want to test the validity of the sqlite database use the official sqlite3 command line client from sqlite.org
sqlite3 metadata.db .dump > dump.sql
You will see that the sqlite database is converted into SQL statements with no issues. calibre itself uses the official sqlite3 libraries.
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