Quote:
Originally Posted by David J. Perry
... depends on margins being set as a paragraph style which ePub seems incapable of handling..?
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I'm not too sure what you mean by this.
Epub should be able to deal with margins in more ways than the mobi (at least on Kindle), after all epub is just html and things like the opf to define standard structure, all collected in a zip archive. The html that you're currently using would be preserved, which should mean that the conversion would be just the same as what you are expecting.
Perhaps it would help if you could give an example of one of your html files (feel free to replace the content with random words).