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Another alternative to do the same thing is to use Sigil, which will also allow you to preserve your html (just disable tidying) - making it far easier to make changes as well as keeping your files in one place and providing a pretty solid set of features.
Just 'add existing' and select all of your html, it will pull in the rest of the referenced files and then save out as an epub. You can then leave this epub inside Calibre's library and edit as needed, doing the conversion to mobi when you want to proof on device.
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