Just remember that Kindle's render/reader management software is all proprietary, while the others are likely using the far more current mupdf or poppler. I guess they might be using the pango pdf backend, which would explain a thing or two.
If they were to attempt to support it better, then there would be even more complaints about it, since it falls into the "fix this problem" rather than "hey, they don't care - let me just avoid it".
If you dont like it, make sure to look at the alternative software, Duokan, Quindle and some other mupdf based — take a look at the development subforum.
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