iBooks. Kindle doesn't have collections, so it's out and Stanza doesn't work properly for me (my ePub paragraphs aren't indented and there is a space between them). iBooks has absolutely everything I need in reader software (and I use Calibre to convert anything I need to ePub, including Mobi).
(Oh, I should mention I mostly read on my iPad -- can't quite understand anyone who reads very much on their iPhone, although I do keep a book or two there for emergencies like having to wait at the doctor's office).
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