If the T1 is rescanning your books, then if you use the plugboards to change the title, it won't do you any good unless the metadata is being put into the epub itself during the copy. But plugboards would be the way to do this (by setting the file name/path or the title).
But even if the T1 is rescanning the books, it shouldn't remove them from collections. It should only be removing them from collections if the file path is different than what is in the database. I'd make sure you are on the latest Calibre. If it is reproducing, I'd open up a bug on Calibre an include the following:
- A copy of books.db after copying files to it via Calibre, but before you detach the device from your PC.
- A copy of books.db after the T1 has rescanned and removed books from the collection (but before Calibre does any additional work on it).
This was a known issue with a couple platforms during the beta builds, but I believe it was dealt with unless some new change elsewhere in Calibre has reintroduced it.
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