I found a small program called 'kindle collection manager' after goign through a couple such as kranf kindle collection manager, amazon's own kindle for pc, etc that does the job. I am still using calibre to manage everything and transfer over, then use this software to adjust collections if a lot need to be adjusted. Just a book or two, I can just do it right on the device.
The program requires a full restart of the kindle after the update (hold for 15 seconds not 7) and only lets you tag books into one category but it is a real help.
Honestly this issue and the fact that the kindle sucks at organizing my series is the only gripe I have and I think I have remedied the first issue. Oh and covers dont always show up (rather I get the first screen of the book?)
Supposedly if I get all the series books in the right publication order on calibre (which i have done) it should auto order them in the kindle if i'm searching by collection. it works sometimes, other times it doesnt. I really think its in what order calibre downloaded them to the kindle i'm thinking.
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