I found that if I deleted all the formats in Calibre except mobi (there's a command that will let you do that in a batch), make sure I have covers for each book.... THEN, reconvert with [pdoc] removed to mobi (the old mobi's will rename and not transfer over) . Then all my books would go to the books area.
There were several books that I had that I couldn't scout covers for - I just let Calibre make covers for them, then I'd have the title.
Regarding series: the only way I know to put them in order is to put a number in the title before the last mobi conversion that removed the pdoc tag.
Hope this helps!
Hugs,
Ratkity
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