Both Aldiko and nook can read side loaded books. The only catch is that the books need to be in a specific folder. When you connect your nc and open calibre, instead of send to device, use send to folder and then navigate to the appropriate folder.
Try Mantano reader which doesn't require for your ebooks to be in a specific folder and can scan your entire device for books. Like aldiko, there's a free and paid version in the market.
Also, both aldiko and mantano work with adobe and Barnes and Nobel drm. You have lots of options. Play around and see what suits you best.
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