I use Calibre too - that's why I don't like it when the Sony software tries to sync. I initially had the Sony Reader because I didn't know if you could update the firmware without it, but it seems you can download the firmware updates directly.
Probably the only use I have for the Sony Reader software at the moment is as another reader for testing epub files if I've been editing them (since they all seem to behave differently). I prefer to use Adobe Digital Editions for downloading new purchases that have DRM.
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