Nothing really.
With Notepad++ it's only a small effort to remove each header/footer, and the search and replace makes it not matter how many chapters or blocks you'll need to edit, wether it be 10 chapters, or 1000, they all get done in a jiffy!
Aside from that there's some cleanup work to do (eg: getting rid of 10 different headings, and getting rid of tables, linespacing, hrefs etc... too.)
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