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Very strange that it is happening with any SD card, and again not with internal memory. That's beyond strange. Is the Sony Reader app set to auto-launch when you connect the T1? I know if two apps are messing with the same DB, it can cause problems (there's a firmware bug where if you connect the T1 while it was asleep, the T1 will continue accessing the DB and can cause corruption in the DB).
Can you send me a couple books.db files from the SD card? Ideally, I'd like to get one after it has been "corrupted" and causing problems. And another that has been handled by the Sony Reader app. If you can wipe the card between these two, that'd be even better. I'll PM you an e-mail address you can send them to.
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