I like Calibre but tend only to use it for file conversion and updating the metadata, I find the file management a bit clunky for my needs. Looks like I might need to invest a bit of time figuring it out.
I never have a problem with my old PRS-600 and the old Sony software, yes it was a bit sluggish to run on a lower spec'ed PC like the net-top I use for my media library but it was simple and straight-forward. You also did not need to use the sync option to transfer books and collections, you could just drag-and-dropped them onto it and they transfered across.
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