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Converting PDF to ePUB is cumbersome to say the least. Your results are depending on the PDF of course. Sometimes Calibre gives reasonable results, as does some other tools. No tool gives a perfect conversion.
You could try to run the PDF through ABBYY, but that also would result in handwork.
Common issues:
- wrong OCR
- paragraphs at the wrong location or not at all
- totally wrong layout
- missing text
- headers and footers (including pagenumbers) throughout the text
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