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Keep in mind that you only get the first 200 characters of each highlight. I found myself opening up the rtf file and deleting the highlights that weren't all that necessary (with 20/20 hindsight) and completing things that I wanted to quote exactly.
What kinds of notes do you take, Ana & Bookworm_Girl, and what further processing do you do with them? You're both keeping the annotated files on an SD card, right, so as not to slow down the reader?
From my laptop, I love clipping things to Evernote and being able to access the information from other computers or on my smartphone. Alternatively, for scholarly work, I've kept notes with bibliographic software.
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