For you it's probably too late, but I solved my empty toc problem as follows:
1. Opened it and a (working) toc from previous project in notepad++
2. Pasted working toc into empty one
3. Went carefully over the first entry and changed the path to point to right html
4. Copy-pasted new path to other entries
5. Opened both htmls (in np++), copied <h2 id...> from old one
6. Searched for h2, did lot of copy-paste between toc and html (chapters' names were different in previous project), simultaneously checked that "mbp_toc_1" number was the same in both files.
Now I have a working toc!
Maybe someone else finds it helpful.
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