I can see my books now.
But it isn't as seamless as it was before I got my kobo touch.
Scion, I didn't have a .trash folder even after I deleted the books. But I checked that they were no where to be found then did as you suggested, ejected the KT, QUIT calibre (which I haven't done before), deleted the metadata.calibre and driver.calibre files, reloaded the books - and there they were. And as I type this I realise I can't remember the exact order I did it! So hopefully next time I'll be able to sort it.
Looks like there are still a few issues to be sorted out but I'm sure the calibre developers will get onto it as soon as they can.
Thanks for your help
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