if you had enabled USB debugging before it got into this mess(I assume you had if you rooted) you can connect it to your computer through a USB cable and use adb to connect to the PE. However, it does not seem like the build.prop file is your problem, it was found that that file has very little to do with causing these kinds of problems.
At the end of the update.sh in the update.zip it does delete the file, this is some kind of security measure I guess, but it is supposed to happen.
Sorry, but I have no idea what could be causing your problem...
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