Thanks for the advice.
I created a catalog and whilst it is very useful for browsing my ebook collection, I still wanted to have each mobi to have a summary at the start.
I bit the bullet, converted all my books again so as to include the metadata... deleted all books from K3, then re-added using Calibre. When I woke up this morning, Kindle was happily indexing them all.
All sorted now. thanks again
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