I also use endnote for scholarly referencing, it can't be beaten. However I do also have all the journal articles in calibre for ease of transferring to my ipad (via itunes). For me the combination works well. I have a separate library in calibre just for academic titles, and have a few custom columns for details like journal name, date, publisher. Calibre handles multiple authors well, so that makes searching via researcher or acadmic easy. I read on the ipad, but if I want to reference from the article I pull the reference from endnote. Oh, and dropbox is definately the way to go with endnote storage.
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