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In Linux parlance, you'll need your block device to show up as /dev/sdX with a partition mapped to /dev/sdX1. If you don't have a partition then it should just be a matter of running fdisk on the device to create one and running mkfs.vfat on it.
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Hmm, I'll try that. Thanks.
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it may also be the that the leads have just been pushed enough on the ones that don't work that they just can't make contact when in the kobo...rare, but it does happen.
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The contacts on the SD cards? I checked them at your suggestion and they don't seem to be damaged. I suspect the problem is with partitions and the file system. This isn't the first time I've run into a similar problem with flash memory.