A quick update. I've almost finished changing and testing a new release version. I'm still looking for another windows 7 machine to test on because it seems many of the reported errors occurred on that OS. I plan to have this uploaded and ready for everyone by Saturday.

The next update will fix:
Support for spaces in Apk and folder names.
Changes supportedSscreen attributes in the manifest file.
More reliable JDK recognition, and failure recovery.
Option to increase decoding speed.
Option to run zipalign to increase the RAM performance on the eDGe.(recommended by Android.org)
Implemented a preferences file to save information. (Stops JDK registry query on every initialization.)